X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=pcoacommand.h;fp=pcoacommand.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=3d24f6a97f799f1c8627ef40d5dbec888da51dc6;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/pcoacommand.h b/pcoacommand.h
deleted file mode 100644
index 3d24f6a..0000000
--- a/pcoacommand.h
+++ /dev/null
@@ -1,50 +0,0 @@
-#ifndef PCOACOMMAND_H
-#define PCOACOMMAND_H
-
-/*
- *  pcoacommand.h
- *  Mothur
- *
- *  Created by westcott on 1/4/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
- 
-#include "command.hpp"
-#include "linearalgebra.h"
-
-
-/*****************************************************************/
-class PCOACommand : public Command {
-	
-public:
-	PCOACommand(string);	
-	PCOACommand();
-	~PCOACommand(){}
-	
-	vector<string> setParameters();
-	string getCommandName()			{ return "pcoa";					}
-	string getCommandCategory()		{ return "Hypothesis Testing";		}
-	string getHelpString();	
-	string getCitation() { return "McCune B, Grace JB, Urban DL (2002). Analysis of ecological communities. MjM Software Design: Gleneden Beach, OR. \nLegendre P, Legendre L (1998). Numerical Ecology. Elsevier: New York. \nhttp://www.mothur.org/wiki/Pcoa"; }
-	string getDescription()		{ return "pcoa"; }
-
-	int execute();
-	void help() { m->mothurOut(getHelpString()); }
-	
-private:
-
-	bool abort, metric;
-	string phylipfile, filename, fbase, outputDir;
-	vector<string> outputNames;
-	LinearAlgebra linearCalc;
-	
-	void get_comment(istream&, char, char);
-	void output(string, vector<string>, vector<vector<double> >&, vector<double>);
-	
-};
-	
-/*****************************************************************/
-	
-#endif
-