X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=pcoacommand.cpp;fp=pcoacommand.cpp;h=4be5ffb8c5b63c4202666aecd57ec58c2be05374;hb=ec5c537e869028c49231dab9a37c00a9edf70723;hp=d8efb2551e2bb6b2f459f14ad041c188f31926da;hpb=16c6e30b7c5a9cbe35989b2aa1d6848711a86d24;p=mothur.git

diff --git a/pcoacommand.cpp b/pcoacommand.cpp
index d8efb25..4be5ffb 100644
--- a/pcoacommand.cpp
+++ b/pcoacommand.cpp
@@ -197,7 +197,7 @@ int PCOACommand::execute(){
 				
 				double corr = linearCalc.calcPearson(EuclidDists, D); //G is the pcoa file, D is the users distance matrix
 				
-				m->mothurOut("Pearson's coefficient using " + toString(i) + " axis: " + toString(corr)); m->mothurOutEndLine();
+				m->mothurOut("Rsq " + toString(i) + " axis: " + toString(corr * corr)); m->mothurOutEndLine();
 				
 				if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {	remove(outputNames[i].c_str());  } return 0; }
 			}