X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=pcoacommand.cpp;fp=pcoacommand.cpp;h=02e165e978dc071ba19808139060866d7e41388c;hb=19fcbbdba99658f5eca244803280f9ee7f9f6607;hp=20e8e1be712765513c1f581b4e94536207f4f773;hpb=65b6a38d00b3a72021611211e7c25392022c69ed;p=mothur.git

diff --git a/pcoacommand.cpp b/pcoacommand.cpp
index 20e8e1b..02e165e 100644
--- a/pcoacommand.cpp
+++ b/pcoacommand.cpp
@@ -172,7 +172,7 @@ int PCOACommand::execute(){
 		
 		output(fbase, names, G, d);
 		
-		if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {	remove(outputNames[i].c_str());  } return 0; }
+		if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {	m->mothurRemove(outputNames[i]);  } return 0; }
 		
 		if (metric) {   
 			
@@ -180,13 +180,13 @@ int PCOACommand::execute(){
 							
 				vector< vector<double> > EuclidDists = linearCalc.calculateEuclidianDistance(G, i); //G is the pcoa file
 				
-				if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {	remove(outputNames[i].c_str());  } return 0; }
+				if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {	m->mothurRemove(outputNames[i]);  } return 0; }
 				
 				double corr = linearCalc.calcPearson(EuclidDists, D); //G is the pcoa file, D is the users distance matrix
 				
 				m->mothurOut("Rsq " + toString(i) + " axis: " + toString(corr * corr)); m->mothurOutEndLine();
 				
-				if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {	remove(outputNames[i].c_str());  } return 0; }
+				if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {	m->mothurRemove(outputNames[i]);  } return 0; }
 			}
 		}