X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=pcacommand.h;h=089d1c102f38d66bfa0d83c2120dd3d3f1cd883e;hb=c5f38b0c83719306fd2e5a7a83e04988b1853f62;hp=8a36323582b6ca42f153110c48f012148d59cd2b;hpb=96b36196d49a3d1f6bc49a26a9d2aa2da7ff876e;p=mothur.git

diff --git a/pcacommand.h b/pcacommand.h
index 8a36323..089d1c1 100644
--- a/pcacommand.h
+++ b/pcacommand.h
@@ -27,9 +27,10 @@ private:
 	bool abort;
 	string phylipfile, columnfile, namefile, format, filename, fbase, outputDir;
 	float cutoff, precision;
+	vector<string> outputNames;
 	
 	void get_comment(istream&, char, char);
-	void read_phylip(istream&, int, vector<string>&, vector<vector<double> >&);
+	int read_phylip(istream&, int, vector<string>&, vector<vector<double> >&);
 	void read(string, vector<string>&, vector<vector<double> >&);
 	double pythag(double, double);
 	void matrix_mult(vector<vector<double> >, vector<vector<double> >, vector<vector<double> >&);