X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=parsimonycommand.h;h=e854294834af55cb0cbe97ec035a0e01f78b66a3;hb=16bea3130e36addc54e2116dfbcd02d706ebee45;hp=5429e77acf8411bd3836e3cc6fa3b1a23db24a5a;hpb=1b2517db06f3c6cd5f5c67198261361ce8dad611;p=mothur.git

diff --git a/parsimonycommand.h b/parsimonycommand.h
index 5429e77..e854294 100644
--- a/parsimonycommand.h
+++ b/parsimonycommand.h
@@ -33,10 +33,11 @@ class ParsimonyCommand : public Command {
 		GlobalData* globaldata;
 		vector<Tree*> T;	   //user trees
 		Tree* randT;  //random tree
-		TreeMap* tmap;
+		TreeMap* tmap; 
+		TreeMap* savetmap;
 		Parsimony* pars;
-		string parsFile, sumFile, distFile;
-		int iters, randomtree, numGroups;
+		string parsFile, sumFile, distFile, randomtree;
+		int iters, numGroups;
 		vector<int> numEachGroup; //vector containing the number of sequences in each group the users wants for random distrib.
 		vector<float> userTreeScores; //scores for users trees
 		vector<float> UScoreSig;  //tree score signifigance when compared to random trees - percentage of random trees with that score or lower.