X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=parsimonycommand.h;h=81fa99ba06c691f9e0ee06f4b73521655b046e8c;hb=8dd3c225255d7084e3aff8740aa4f1f1cabb367a;hp=5e5484f4687474886730e437ea3d44d6aced3ccb;hpb=8f7f4fc08b8c70d9ef0f79607813dba4e926e102;p=mothur.git diff --git a/parsimonycommand.h b/parsimonycommand.h index 5e5484f..81fa99b 100644 --- a/parsimonycommand.h +++ b/parsimonycommand.h @@ -30,7 +30,8 @@ public: string getCommandCategory() { return "Hypothesis Testing"; } string getHelpString(); string getCitation() { return "Slatkin M, Maddison WP (1989). A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics 123: 603-13. \nSlatkin M, Maddison WP (1990). Detecting isolation by distance using phylogenies of genes. Genetics 126: 249-60. \nMartin AP (2002). Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl Environ Microbiol 68: 3673-82. \nSchloss PD, Handelsman J (2006). Introducing TreeClimber, a test to compare microbial community structure. Appl Environ Microbiol 72: 2379-84.\nhttp://www.mothur.org/wiki/Parsimony"; } - + string getDescription() { return "generic test that describes whether two or more communities have the same structure"; } + int execute(); void help() { m->mothurOut(getHelpString()); }