X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=parsimonycommand.h;h=81fa99ba06c691f9e0ee06f4b73521655b046e8c;hb=2bb9267aa4b4ecdf8488b06605cc9f3f36fa4332;hp=274cac4e94f46b51aca95695f9fc4d7a4ba9c981;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;p=mothur.git

diff --git a/parsimonycommand.h b/parsimonycommand.h
index 274cac4..81fa99b 100644
--- a/parsimonycommand.h
+++ b/parsimonycommand.h
@@ -29,7 +29,9 @@ public:
 	string getCommandName()			{ return "parsimony";				}
 	string getCommandCategory()		{ return "Hypothesis Testing";		}
 	string getHelpString();	
-	
+	string getCitation() { return "Slatkin M, Maddison WP (1989). A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics 123: 603-13. \nSlatkin M, Maddison WP (1990). Detecting isolation by distance using phylogenies of genes. Genetics 126: 249-60. \nMartin AP (2002). Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl Environ Microbiol 68: 3673-82. \nSchloss PD, Handelsman J (2006). Introducing TreeClimber, a test to compare microbial community structure. Appl Environ Microbiol 72: 2379-84.\nhttp://www.mothur.org/wiki/Parsimony"; }
+	string getDescription()		{ return "generic test that describes whether two or more communities have the same structure"; }
+
 	int execute();
 	void help() { m->mothurOut(getHelpString()); }