X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=parsimony.h;h=bf0e0d4f90198ef353c2c1899414f699454c8a7e;hb=2cfb747aa8f63bde9c1114001e6d2e81ccd26178;hp=b116aa2d1a55e0ba84571f1f4c9500c6be5d8fcc;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;p=mothur.git

diff --git a/parsimony.h b/parsimony.h
index b116aa2..bf0e0d4 100644
--- a/parsimony.h
+++ b/parsimony.h
@@ -12,17 +12,16 @@
  */
 
 #include "treecalculator.h"
-#include "treemap.h"
+#include "counttable.h"
 
 /***********************************************************************/
 
 class Parsimony : public TreeCalculator  {
 	
 	public:
-		Parsimony(TreeMap* t) : tmap(t) {};
+		Parsimony() {};
 		~Parsimony() {};
 		EstOutput getValues(Tree*, int, string);
-		//EstOutput getValues(Tree*, string, string) { return data; }
 		
 	private:
 		struct linePair {
@@ -33,12 +32,11 @@ class Parsimony : public TreeCalculator  {
 		vector<linePair> lines;
 	
 		EstOutput data;
-		TreeMap* tmap;
 		int processors;
 		string outputDir;
 	
-		EstOutput driver(Tree*, vector< vector<string> >, int, int); 
-		EstOutput createProcesses(Tree*, vector< vector<string> >);
+		EstOutput driver(Tree*, vector< vector<string> >, int, int, CountTable*); 
+		EstOutput createProcesses(Tree*, vector< vector<string> >, CountTable*);
 };
 
 /***********************************************************************/