X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=parsimony.h;h=7316d508dd52729c8ddec87c34a08c76586cd4d1;hb=957d67f7d8bbadfd2930de061e89fd9b149270fd;hp=b5d7e209c415274020f4d359a35bbcdf374d8383;hpb=d037597badc8d18e235c59f0c1114180edb7f98f;p=mothur.git

diff --git a/parsimony.h b/parsimony.h
index b5d7e20..7316d50 100644
--- a/parsimony.h
+++ b/parsimony.h
@@ -19,14 +19,26 @@
 class Parsimony : public TreeCalculator  {
 	
 	public:
-		Parsimony(TreeMap* t) : tmap(t) {};
+		Parsimony() {};
 		~Parsimony() {};
-		EstOutput getValues(Tree*);
+		EstOutput getValues(Tree*, int, string);
 		
 	private:
+		struct linePair {
+			int start;
+			int num;
+			linePair(int i, int j) : start(i), num(j) {}
+		};
+		vector<linePair> lines;
+	
 		EstOutput data;
-		TreeMap* tmap;
+		int processors;
+		string outputDir;
+	
+		EstOutput driver(Tree*, vector< vector<string> >, int, int, TreeMap*); 
+		EstOutput createProcesses(Tree*, vector< vector<string> >, TreeMap*);
 };
 
 /***********************************************************************/
-#endif
\ No newline at end of file
+
+#endif