X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=parsimony.h;fp=parsimony.h;h=7316d508dd52729c8ddec87c34a08c76586cd4d1;hb=f55cf350ca6643f8eb070d8336e1957699a3f109;hp=b116aa2d1a55e0ba84571f1f4c9500c6be5d8fcc;hpb=eb4bb52af987ff4df7354d95d60cd763aec537e1;p=mothur.git

diff --git a/parsimony.h b/parsimony.h
index b116aa2..7316d50 100644
--- a/parsimony.h
+++ b/parsimony.h
@@ -19,10 +19,9 @@
 class Parsimony : public TreeCalculator  {
 	
 	public:
-		Parsimony(TreeMap* t) : tmap(t) {};
+		Parsimony() {};
 		~Parsimony() {};
 		EstOutput getValues(Tree*, int, string);
-		//EstOutput getValues(Tree*, string, string) { return data; }
 		
 	private:
 		struct linePair {
@@ -33,12 +32,11 @@ class Parsimony : public TreeCalculator  {
 		vector<linePair> lines;
 	
 		EstOutput data;
-		TreeMap* tmap;
 		int processors;
 		string outputDir;
 	
-		EstOutput driver(Tree*, vector< vector<string> >, int, int); 
-		EstOutput createProcesses(Tree*, vector< vector<string> >);
+		EstOutput driver(Tree*, vector< vector<string> >, int, int, TreeMap*); 
+		EstOutput createProcesses(Tree*, vector< vector<string> >, TreeMap*);
 };
 
 /***********************************************************************/