X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=parselistscommand.h;h=1faeaeb9f31f13ce0b3a5e4f1fbbe1f524ac6501;hb=c7e8c2d15bd7cedcfdf18675cb0ea1a0dcd0e3c0;hp=c765bcdd86c34c89b688685969e89d55928809f6;hpb=aa9238c0a9e6e7aa0ed8b8b606b08ad4fd7dcfe3;p=mothur.git

diff --git a/parselistscommand.h b/parselistscommand.h
index c765bcd..1faeaeb 100644
--- a/parselistscommand.h
+++ b/parselistscommand.h
@@ -19,10 +19,20 @@
 class ParseListCommand : public Command {
 	
 public:
-	ParseListCommand(string);	
-	~ParseListCommand();
-	int execute();	
-	void help();
+	ParseListCommand(string);
+	ParseListCommand();	
+	~ParseListCommand() {}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "parse.list";				}
+	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	string getOutputFileNameTag(string, string);
+	string getHelpString();	
+	string getCitation() { return "http://www.mothur.org/wiki/Parse.list"; }
+	string getDescription()		{ return "parses a list file by group"; }
+	
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
 	
 private:
 	int parse(ListVector*);
@@ -35,6 +45,7 @@ private:
 	string outputDir, listfile, groupfile, label;
 	set<string> labels;
 	bool abort, allLines;
+	vector<string> outputNames;
 	
 	map<string, ofstream*> filehandles;
 	map<string, ofstream*>::iterator it3;