X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=parselistscommand.cpp;h=4e61a58d9e5cb4bc640c544797c87a363580575e;hb=e10c72304ee071c0c40e0218a06d89dc4731cbc2;hp=bb096d8646873f74c42bd8970b9eef9693a3252e;hpb=55386dddad84cc1140d736cabaf4dd0ae16f2e01;p=mothur.git

diff --git a/parselistscommand.cpp b/parselistscommand.cpp
index bb096d8..4e61a58 100644
--- a/parselistscommand.cpp
+++ b/parselistscommand.cpp
@@ -45,6 +45,27 @@ string ParseListCommand::getHelpString(){
 		exit(1);
 	}
 }
+//**********************************************************************************************************************
+string ParseListCommand::getOutputFileNameTag(string type, string inputName=""){	
+	try {
+        string outputFileName = "";
+		map<string, vector<string> >::iterator it;
+        
+        //is this a type this command creates
+        it = outputTypes.find(type);
+        if (it == outputTypes.end()) {  m->mothurOut("[ERROR]: this command doesn't create a " + type + " output file.\n"); }
+        else {
+            if (type == "list") {  outputFileName =  "list"; }
+            else { m->mothurOut("[ERROR]: No definition for type " + type + " output file tag.\n"); m->control_pressed = true;  }
+        }
+        return outputFileName;
+	}
+	catch(exception& e) {
+		m->errorOut(e, "ParseListCommand", "getOutputFileNameTag");
+		exit(1);
+	}
+}
+
 //**********************************************************************************************************************
 ParseListCommand::ParseListCommand(){	
 	try {
@@ -180,7 +201,7 @@ int ParseListCommand::execute(){
 			temp = new ofstream;
 			filehandles[gGroups[i]] = temp;
 			
-			string filename = fileroot +  gGroups[i] + ".list";
+			string filename = fileroot +  gGroups[i] + "." + getOutputFileNameTag("list");
 			outputNames.push_back(filename); outputTypes["list"].push_back(filename);
 			m->openOutputFile(filename, *temp);
 		}