X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=parselistcommand.h;h=9e9e968077bc4394b6c82f60bef91b18fe19ca1b;hb=510b1cfc25cd79391d6973ca20c5ec25fb1bb3b2;hp=0477acdb06e26ada0f64a25370138a75dc7a06ff;hpb=154e089bcd37c2c2f773e53ffb88a20170b27037;p=mothur.git

diff --git a/parselistcommand.h b/parselistcommand.h
index 0477acd..9e9e968 100644
--- a/parselistcommand.h
+++ b/parselistcommand.h
@@ -31,7 +31,8 @@ class ParseListCommand : public Command {
 public:
 	ParseListCommand();	
 	~ParseListCommand();
-	int execute();	
+	int execute();
+	void help() {}	
 	
 private:
 	GlobalData* globaldata;
@@ -39,13 +40,14 @@ private:
 	InputData* input;
 	ReadOTUFile* read;
 	map<string, ofstream*> filehandles;
-	map<string, SharedListVector*> groupOfLists;
+	map<string, SharedListVector*> mapOfLists;
 	SharedListVector* list;
 	map<string, string> listGroups; //maps group name to sequences from that group in a specific OTU
 	map<string, string>::iterator it;
 	map<string, SharedListVector*>::iterator it2;
 	map<string, ofstream*>::iterator it3;
-	void parse(int);
+	void parse(int, SharedListVector*);
+	void process(SharedListVector*);
 	string fileroot;
 };