X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=parsefastaqcommand.h;h=b4d90e542a98f329dd166a93c54d57852e0f54dd;hb=55bbd10379db27def51cec72a8819d775f73e45b;hp=96fcb7d6799358ff4e10f930d1ad4165763b46a0;hpb=90708fe9701e3827e477c82fb3652539c3bf2a0d;p=mothur.git diff --git a/parsefastaqcommand.h b/parsefastaqcommand.h index 96fcb7d..b4d90e5 100644 --- a/parsefastaqcommand.h +++ b/parsefastaqcommand.h @@ -23,8 +23,9 @@ public: vector setParameters(); string getCommandName() { return "parse.fastq"; } string getCommandCategory() { return "Sequence Processing"; } - string getOutputFileNameTag(string, string); + string getHelpString(); + string getOutputPattern(string); string getCitation() { return "http://www.mothur.org/wiki/Parse.fastq"; } string getDescription() { return "reads a fastq file and creates a fasta and quality file"; }