X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=parsefastaqcommand.h;h=96fcb7d6799358ff4e10f930d1ad4165763b46a0;hb=035f86272c776e1cccaa47021e26782e49cd41e7;hp=6feabce848c09c21b2e276df8361ac4d78667f22;hpb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;p=mothur.git

diff --git a/parsefastaqcommand.h b/parsefastaqcommand.h
index 6feabce..96fcb7d 100644
--- a/parsefastaqcommand.h
+++ b/parsefastaqcommand.h
@@ -23,6 +23,7 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "parse.fastq";		}
 	string getCommandCategory()		{ return "Sequence Processing"; }
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
 	string getCitation() { return "http://www.mothur.org/wiki/Parse.fastq"; }
 	string getDescription()		{ return "reads a fastq file and creates a fasta and quality file"; }
@@ -33,10 +34,11 @@ public:
 private:
 
 	vector<string> outputNames;	
-	string outputDir, fastaQFile;
+	string outputDir, fastaQFile, format;
 	bool abort, fasta, qual;
 	
 	vector<int> convertQual(string);
+    vector<char> convertTable;
 };
 
 #endif