X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=parsefastaqcommand.h;h=4481b98bb23bdbcd47a6059b2df0904c176ae9bf;hb=6ede3bf5c0a9eedb23f24577a97da81ab3e1f7df;hp=60524566b2a4f02e4571c38d0602980e676d8138;hpb=a44542a3c740cf957cff72ac71742f2fe48b0eaf;p=mothur.git

diff --git a/parsefastaqcommand.h b/parsefastaqcommand.h
index 6052456..4481b98 100644
--- a/parsefastaqcommand.h
+++ b/parsefastaqcommand.h
@@ -23,6 +23,7 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "parse.fastq";		}
 	string getCommandCategory()		{ return "Sequence Processing"; }
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
 	string getCitation() { return "http://www.mothur.org/wiki/Parse.fastq"; }
 	string getDescription()		{ return "reads a fastq file and creates a fasta and quality file"; }
@@ -34,7 +35,7 @@ private:
 
 	vector<string> outputNames;	
 	string outputDir, fastaQFile;
-	bool abort;
+	bool abort, fasta, qual;
 	
 	vector<int> convertQual(string);
 };