X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=parsefastaqcommand.cpp;h=9cba70b9d2772edba281cd5f03459d1fdc32a966;hb=c47e480b743d1c242b8c527b6d12f992c68b8c2c;hp=75d6fa01be65bcccf8f176bfd29dcce843efc0e3;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;p=mothur.git

diff --git a/parsefastaqcommand.cpp b/parsefastaqcommand.cpp
index 75d6fa0..9cba70b 100644
--- a/parsefastaqcommand.cpp
+++ b/parsefastaqcommand.cpp
@@ -62,6 +62,7 @@ ParseFastaQCommand::ParseFastaQCommand(string option){
 		abort = false; calledHelp = false;   
 		
 		if(option == "help") {	help(); abort = true; calledHelp = true; }
+		else if(option == "citation") { citation(); abort = true; calledHelp = true;}
 		
 		else {
 			vector<string> myArray = setParameters();
@@ -168,7 +169,7 @@ int ParseFastaQCommand::execute(){
 		outFasta.close();
 		outQual.close();
 		
-		if (m->control_pressed) { outputTypes.clear(); remove(fastaFile.c_str()); remove(qualFile.c_str()); return 0; }
+		if (m->control_pressed) { outputTypes.clear(); m->mothurRemove(fastaFile); m->mothurRemove(qualFile); return 0; }
 		
 		//set fasta file as new current fastafile
 		string current = "";