X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=parsefastaqcommand.cpp;fp=parsefastaqcommand.cpp;h=9cba70b9d2772edba281cd5f03459d1fdc32a966;hb=19fcbbdba99658f5eca244803280f9ee7f9f6607;hp=1033ba5d5dd3a64b001e2e8bc120b792df02e824;hpb=65b6a38d00b3a72021611211e7c25392022c69ed;p=mothur.git

diff --git a/parsefastaqcommand.cpp b/parsefastaqcommand.cpp
index 1033ba5..9cba70b 100644
--- a/parsefastaqcommand.cpp
+++ b/parsefastaqcommand.cpp
@@ -169,7 +169,7 @@ int ParseFastaQCommand::execute(){
 		outFasta.close();
 		outQual.close();
 		
-		if (m->control_pressed) { outputTypes.clear(); remove(fastaFile.c_str()); remove(qualFile.c_str()); return 0; }
+		if (m->control_pressed) { outputTypes.clear(); m->mothurRemove(fastaFile); m->mothurRemove(qualFile); return 0; }
 		
 		//set fasta file as new current fastafile
 		string current = "";