X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=pairwiseseqscommand.h;h=cf73f3e82a2c0bd59bfff9fad48ee4628a2b1917;hb=173a1a82a4e4aa6bef8e4ba77bce342fb9c6563e;hp=b40d6c97ea10bbc708ddc2c4985be7b960843fab;hpb=cdf9083dc32543cc640e72e9ca3aee0323cbad45;p=mothur.git

diff --git a/pairwiseseqscommand.h b/pairwiseseqscommand.h
index b40d6c9..cf73f3e 100644
--- a/pairwiseseqscommand.h
+++ b/pairwiseseqscommand.h
@@ -32,12 +32,14 @@ public:
 	void help();	
 	
 private:
-	struct linePair {
+	struct distlinePair {
 		int start;
 		int end;
 	};
-	map<int, int> processIDS;   //end line, processid
-	vector<linePair*> lines;
+	
+	
+	vector<int> processIDS;   //end line, processid
+	vector<distlinePair> lines;
 	map<string, vector<string> > outputTypes;
 	
 	Alignment* alignment;