X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=pairwiseseqscommand.h;h=90c21b25a7c35c47834ea7311f3e7f969163fc98;hb=6b32d112bb60e9f7eb6d4407a4eed4c49b67bced;hp=cb68e7fa8ef44ce231284e11f3f9a669396d6a44;hpb=c48d91112209b841444923670dca5454da0e2a4d;p=mothur.git

diff --git a/pairwiseseqscommand.h b/pairwiseseqscommand.h
index cb68e7f..90c21b2 100644
--- a/pairwiseseqscommand.h
+++ b/pairwiseseqscommand.h
@@ -193,6 +193,8 @@ static DWORD WINAPI MyPairwiseSquareThreadFunction(LPVOID lpParam){
 				distCalculator->calcDist(seqI, seqJ);
 				double dist = distCalculator->getDist();
                 
+                if (pDataArray->m->debug) { pDataArray->m->mothurOut("[DEBUG]: " + seqI.getName() + '\t' +  alignment->getSeqAAln() + '\n' + seqJ.getName() + alignment->getSeqBAln() + '\n' + "distance = " + toString(dist) + "\n"); }
+                
 				outFile << dist << '\t'; 
 			}
 			
@@ -293,6 +295,8 @@ static DWORD WINAPI MyPairwiseThreadFunction(LPVOID lpParam){
 				distCalculator->calcDist(seqI, seqJ);
 				double dist = distCalculator->getDist();
                 
+                if (pDataArray->m->debug) { pDataArray->m->mothurOut("[DEBUG]: " + seqI.getName() + '\t' +  alignment->getSeqAAln() + '\n' + seqJ.getName() + alignment->getSeqBAln() + '\n' + "distance = " + toString(dist) + "\n"); }
+                
 				if(dist <= pDataArray->cutoff){
 					if (pDataArray->output == "column") { outFile << pDataArray->alignDB.get(i).getName() << ' ' << pDataArray->alignDB.get(j).getName() << ' ' << dist << endl; }
 				}