X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=pairwiseseqscommand.h;h=33fcfca0b6d0207ed1f282a36061893805745203;hb=98ca1e6ab30ab49e4a78bb6012d34c9c2db22702;hp=ba82f47dfc7025481d3a6b7763a525aff690cece;hpb=a78fa674631a7d8a8d4e5043384ee244ed65cc09;p=mothur.git

diff --git a/pairwiseseqscommand.h b/pairwiseseqscommand.h
index ba82f47..33fcfca 100644
--- a/pairwiseseqscommand.h
+++ b/pairwiseseqscommand.h
@@ -40,7 +40,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "pairwise.seqs";		}
 	string getCommandCategory()		{ return "Sequence Processing"; }
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "Needleman SB, Wunsch CD (1970). A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol 48: 443-53. [ for needleman ]\nGotoh O (1982). An improved algorithm for matching biological sequences. J Mol Biol 162: 705-8. [ for gotoh ] \nhttp://www.mothur.org/wiki/Pairwise.seqs"; }
 	string getDescription()		{ return "calculates pairwise distances from an unaligned fasta file"; }
 
@@ -115,7 +117,7 @@ struct pairwiseData {
 };
 
 /**************************************************************************************************/
-#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
 #else
 static DWORD WINAPI MyPairwiseSquareThreadFunction(LPVOID lpParam){ 
 	pairwiseData* pDataArray;