X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=pairwiseseqscommand.h;h=0e749d5c7e252ceb7c777de1e8878084f61b0a4d;hb=e10c72304ee071c0c40e0218a06d89dc4731cbc2;hp=ba82f47dfc7025481d3a6b7763a525aff690cece;hpb=a78fa674631a7d8a8d4e5043384ee244ed65cc09;p=mothur.git

diff --git a/pairwiseseqscommand.h b/pairwiseseqscommand.h
index ba82f47..0e749d5 100644
--- a/pairwiseseqscommand.h
+++ b/pairwiseseqscommand.h
@@ -40,6 +40,7 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "pairwise.seqs";		}
 	string getCommandCategory()		{ return "Sequence Processing"; }
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
 	string getCitation() { return "Needleman SB, Wunsch CD (1970). A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol 48: 443-53. [ for needleman ]\nGotoh O (1982). An improved algorithm for matching biological sequences. J Mol Biol 162: 705-8. [ for gotoh ] \nhttp://www.mothur.org/wiki/Pairwise.seqs"; }
 	string getDescription()		{ return "calculates pairwise distances from an unaligned fasta file"; }
@@ -115,7 +116,7 @@ struct pairwiseData {
 };
 
 /**************************************************************************************************/
-#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
 #else
 static DWORD WINAPI MyPairwiseSquareThreadFunction(LPVOID lpParam){ 
 	pairwiseData* pDataArray;