X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=padding.c;h=a3008fc54a531093200dd1b61960bf040a48cee8;hb=2594fb7e8055fefc08b37a14ad437aa9bafbe837;hp=e2afefb4840cd8acca35f07f200501b87990051a;hpb=f6df8dea863e5216923f81108eb853bd9ecbcf8e;p=samtools.git

diff --git a/padding.c b/padding.c
index e2afefb..a3008fc 100644
--- a/padding.c
+++ b/padding.c
@@ -41,6 +41,8 @@ static void unpad_seq(bam1_t *b, kstring_t *s)
 			for (i = 0; i < ol; ++i, ++j) s->s[s->l++] = bam1_seqi(seq, j);
 		} else if (op == BAM_CSOFT_CLIP) {
 			j += ol;
+		} else if (op == BAM_CHARD_CLIP) {
+			/* do nothing */
 		} else if (op == BAM_CDEL || op == BAM_CPAD) {
 			for (i = 0; i < ol; ++i) s->s[s->l++] = 0;
                 } else {