X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=otuhierarchycommand.h;h=dd5f3a7adc759733bf3972392485c79b94669977;hb=8bc3e5b38c2317a1715f53be22fa96455868c281;hp=1cd427f1a7af8442d4747e65662bbf431ccdcbbd;hpb=5a1e62397b91f57d0d3aff635891df04b8999a88;p=mothur.git

diff --git a/otuhierarchycommand.h b/otuhierarchycommand.h
index 1cd427f..dd5f3a7 100644
--- a/otuhierarchycommand.h
+++ b/otuhierarchycommand.h
@@ -18,7 +18,12 @@ class OtuHierarchyCommand : public Command {
 
 public:
 	OtuHierarchyCommand(string);
+	OtuHierarchyCommand();
 	~OtuHierarchyCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
 	void help();
 	
@@ -26,6 +31,8 @@ private:
 	bool abort;
 	set<string> labels; //holds labels to be used
 	string label, listFile, outputDir, output;
+	vector<string> outputNames;
+	map<string, vector<string> > outputTypes;
 	
 	vector<ListVector> getListVectors();