X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=otuhierarchycommand.h;h=dd5f3a7adc759733bf3972392485c79b94669977;hb=4f9a6e14a608172f8a97f0297a3b8e6ea267c518;hp=39795dc3055e1a1f8a057d3335b265c4d5ce4209;hpb=ee4dd201fa4f2c4ede5b2e525c82cce0a37de363;p=mothur.git

diff --git a/otuhierarchycommand.h b/otuhierarchycommand.h
index 39795dc..dd5f3a7 100644
--- a/otuhierarchycommand.h
+++ b/otuhierarchycommand.h
@@ -18,14 +18,21 @@ class OtuHierarchyCommand : public Command {
 
 public:
 	OtuHierarchyCommand(string);
+	OtuHierarchyCommand();
 	~OtuHierarchyCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
 	void help();
 	
 private:
 	bool abort;
 	set<string> labels; //holds labels to be used
-	string label, listFile;
+	string label, listFile, outputDir, output;
+	vector<string> outputNames;
+	map<string, vector<string> > outputTypes;
 	
 	vector<ListVector> getListVectors();