X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=otuhierarchycommand.h;fp=otuhierarchycommand.h;h=b82ee7606cdafba5c3f392546cb82858eb8aad8b;hb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;hp=dd5f3a7adc759733bf3972392485c79b94669977;hpb=36a867cbd85d9c276d3c8d13f25a150bbbe2466b;p=mothur.git

diff --git a/otuhierarchycommand.h b/otuhierarchycommand.h
index dd5f3a7..b82ee76 100644
--- a/otuhierarchycommand.h
+++ b/otuhierarchycommand.h
@@ -19,20 +19,22 @@ class OtuHierarchyCommand : public Command {
 public:
 	OtuHierarchyCommand(string);
 	OtuHierarchyCommand();
-	~OtuHierarchyCommand();
-	vector<string> getRequiredParameters();
-	vector<string> getValidParameters();
-	vector<string> getRequiredFiles();
-	map<string, vector<string> > getOutputFiles() { return outputTypes; }
-	int execute();
-	void help();
+	~OtuHierarchyCommand(){}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "otu.hierarchy";			}
+	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	string getHelpString();	
+	
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
+	
 	
 private:
 	bool abort;
 	set<string> labels; //holds labels to be used
 	string label, listFile, outputDir, output;
 	vector<string> outputNames;
-	map<string, vector<string> > outputTypes;
 	
 	vector<ListVector> getListVectors();