X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=otuhierarchycommand.h;fp=otuhierarchycommand.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=8a2c862cb66398ec1c00e964c627d158fc0d39c0;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/otuhierarchycommand.h b/otuhierarchycommand.h
deleted file mode 100644
index 8a2c862..0000000
--- a/otuhierarchycommand.h
+++ /dev/null
@@ -1,50 +0,0 @@
-#ifndef OTUHIERARCHYCOMMAND_H
-#define OTUHIERARCHYCOMMAND_H
-/*
- *  otuhierarchycommand.h
- *  Mothur
- *
- *  Created by westcott on 1/19/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-#include "command.hpp"
-#include "listvector.hpp"
-
-//**********************************************************************************************************************
-
-class OtuHierarchyCommand : public Command {
-
-public:
-	OtuHierarchyCommand(string);
-	OtuHierarchyCommand();
-	~OtuHierarchyCommand(){}
-	
-	vector<string> setParameters();
-	string getCommandName()			{ return "otu.hierarchy";			}
-	string getCommandCategory()		{ return "OTU-Based Approaches";	}
-	string getHelpString();	
-	string getCitation() { return "http://www.mothur.org/wiki/Otu.hierarchy"; }
-	string getDescription()		{ return "relates OTUs at different distances"; }
-
-	
-	int execute(); 
-	void help() { m->mothurOut(getHelpString()); }	
-	
-	
-private:
-	bool abort;
-	set<string> labels; //holds labels to be used
-	string label, listFile, outputDir, output;
-	vector<string> outputNames;
-	
-	vector<ListVector> getListVectors();
-		
-};
-
-//**********************************************************************************************************************
-
-#endif
-
-