X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=otuassociationcommand.h;h=f1d047d97158c966bbeae80985b51c4725648885;hb=ee8403d4eb5760187d62b42a9cf4272de8fc0ec4;hp=7aaa88a61c37a21ec6a9af5d1bb8f0c90066c222;hpb=8dd3c225255d7084e3aff8740aa4f1f1cabb367a;p=mothur.git

diff --git a/otuassociationcommand.h b/otuassociationcommand.h
index 7aaa88a..f1d047d 100644
--- a/otuassociationcommand.h
+++ b/otuassociationcommand.h
@@ -33,15 +33,19 @@ public:
 	void help() { m->mothurOut(getHelpString()); }	
 private:
 	
-	string sharedfile, relabundfile, groups, label, inputFileName, outputDir, method;
+	string sharedfile, relabundfile, metadatafile, groups, label, inputFileName, outputDir, method;
 	bool abort, pickedGroups, allLines;
 	set<string> labels;
+    vector<SharedRAbundFloatVector*> metadataLookup;
+    vector< vector< double> > metadata;
 	
-	vector<string> outputNames, Groups;
+	vector<string> outputNames, Groups, metadataLabels;
 	int processShared();
 	int process(vector<SharedRAbundVector*>&);
 	int processRelabund();
 	int process(vector<SharedRAbundFloatVector*>&);
+    int readMetadata();
+    int getMetadata();
 	
 };