X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=otuassociationcommand.h;h=f1d047d97158c966bbeae80985b51c4725648885;hb=36a6b02cf7f09d2bc34376b588944a9ca73429c5;hp=7aaa88a61c37a21ec6a9af5d1bb8f0c90066c222;hpb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;p=mothur.git

diff --git a/otuassociationcommand.h b/otuassociationcommand.h
index 7aaa88a..f1d047d 100644
--- a/otuassociationcommand.h
+++ b/otuassociationcommand.h
@@ -33,15 +33,19 @@ public:
 	void help() { m->mothurOut(getHelpString()); }	
 private:
 	
-	string sharedfile, relabundfile, groups, label, inputFileName, outputDir, method;
+	string sharedfile, relabundfile, metadatafile, groups, label, inputFileName, outputDir, method;
 	bool abort, pickedGroups, allLines;
 	set<string> labels;
+    vector<SharedRAbundFloatVector*> metadataLookup;
+    vector< vector< double> > metadata;
 	
-	vector<string> outputNames, Groups;
+	vector<string> outputNames, Groups, metadataLabels;
 	int processShared();
 	int process(vector<SharedRAbundVector*>&);
 	int processRelabund();
 	int process(vector<SharedRAbundFloatVector*>&);
+    int readMetadata();
+    int getMetadata();
 	
 };