X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=otuassociationcommand.h;h=7f7664be5eda5568f17723e8ccede599c1169f8b;hb=5c5c0428f6d548c28a8b903ac80efed4f92d59db;hp=f1d047d97158c966bbeae80985b51c4725648885;hpb=05c52893c6c2467381fe7e7b769d86b6209af2e1;p=mothur.git

diff --git a/otuassociationcommand.h b/otuassociationcommand.h
index f1d047d..7f7664b 100644
--- a/otuassociationcommand.h
+++ b/otuassociationcommand.h
@@ -25,6 +25,7 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "otu.association";			}
 	string getCommandCategory()		{ return "Hypothesis Testing";		}
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
 	string getCitation() { return "http://www.mothur.org/wiki/Otu.association"; }
 	string getDescription()		{ return "calculate the correlation coefficient for the otus in a shared/relabund file"; }
@@ -35,6 +36,7 @@ private:
 	
 	string sharedfile, relabundfile, metadatafile, groups, label, inputFileName, outputDir, method;
 	bool abort, pickedGroups, allLines;
+    double cutoff;
 	set<string> labels;
     vector<SharedRAbundFloatVector*> metadataLookup;
     vector< vector< double> > metadata;