X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=otuassociationcommand.cpp;fp=otuassociationcommand.cpp;h=eeefb41ffa9781aacad02a594cd4d61859631cb0;hb=82723a54e6109e2d46d84c10e87727cebd5a18ea;hp=b520ca69ceb898c9321cf8b7b6cf565588377079;hpb=e41b86a600fe30f5df9507d7e55027e7b8bd7dd6;p=mothur.git

diff --git a/otuassociationcommand.cpp b/otuassociationcommand.cpp
index b520ca6..eeefb41 100644
--- a/otuassociationcommand.cpp
+++ b/otuassociationcommand.cpp
@@ -308,7 +308,8 @@ int OTUAssociationCommand::process(vector<SharedRAbundVector*>& lookup){
 				else if (method == "kendall")	{	coef = linear.calcKendall(xy[i], xy[k], sig);	}                   
 				else { m->mothurOut("[ERROR]: invalid method, choices are spearman, pearson or kendall."); m->mothurOutEndLine(); m->control_pressed = true; }
 			
-				out << m->binLabelsInFile[i] << '\t' << m->binLabelsInFile[k] << '\t' << coef << '\t' << sig << endl;
+				if (m->binLabelsInFile.size() != 0) { out << m->binLabelsInFile[i] << '\t' << m->binLabelsInFile[k] << '\t' << coef << '\t' << sig << endl; }
+                else { out << i+1 << '\t' << k+1 << '\t' << coef << '\t' << sig << endl; }
 			}
 		}
 		
@@ -436,7 +437,8 @@ int OTUAssociationCommand::process(vector<SharedRAbundFloatVector*>& lookup){
 				else if (method == "kendall")	{	coef = linear.calcKendall(xy[i], xy[k], sig);	}                   
 				else { m->mothurOut("[ERROR]: invalid method, choices are spearman, pearson or kendall."); m->mothurOutEndLine(); m->control_pressed = true; }
 				
-				out << m->binLabelsInFile[i] << '\t' << m->binLabelsInFile[k] << coef << '\t' << sig << endl;
+                if (m->binLabelsInFile.size() != 0) { out << m->binLabelsInFile[i] << '\t' << m->binLabelsInFile[k] << '\t' << coef << '\t' << sig << endl; }
+                else { out << i+1 << '\t' << k+1 << '\t' << coef << '\t' << sig << endl; }
 			}
 		}