X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=otuassociationcommand.cpp;fp=otuassociationcommand.cpp;h=4b5596441081ce9e2becf9df5d61c4f4636a51e3;hb=5d77fd07180d1fb8561ff1962e6d7429caf8555e;hp=c82510c3d8d0b531d13e4c847d16fe98aa72d611;hpb=fc3b1fc4fc1c4e38fde6b0c0ee7896b5fe0b9d57;p=mothur.git

diff --git a/otuassociationcommand.cpp b/otuassociationcommand.cpp
index c82510c..4b55964 100644
--- a/otuassociationcommand.cpp
+++ b/otuassociationcommand.cpp
@@ -300,7 +300,19 @@ int OTUAssociationCommand::process(vector<SharedRAbundVector*>& lookup){
 			for (int k = 0; k < i; k++) {
 				
 				if (m->control_pressed) { out.close(); return 0; }
-												
+				
+                /*cout << m->binLabelsInFile[i] << " <- c(" << xy[i][0];
+                for (int l = 1; l < xy[i].size(); l++){
+                    cout << ", " << xy[i][l];
+                }
+                cout << ")\n";
+                
+                cout << m->binLabelsInFile[k] << " <- c(" << xy[k][0];
+                for (int l = 1; l < xy[k].size(); l++){
+                    cout << ", " << xy[k][l];
+                }
+                cout << ")\n";*/
+
 				double coef = 0.0;
 				double sig = 0.0;
 				if (method == "spearman")		{   coef = linear.calcSpearman(xy[i], xy[k], sig);	}
@@ -314,6 +326,7 @@ int OTUAssociationCommand::process(vector<SharedRAbundVector*>& lookup){
 		
 		out.close();
 		
+               
 		return 0;
 		
 	}