X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=ordervector.hpp;fp=ordervector.hpp;h=92259a8463625082e8580530ffe2d8a638f1419b;hb=20a2d0350a737a434c89f303662d64a8eeea7b05;hp=0000000000000000000000000000000000000000;hpb=bbb5879a7e566935c23d63d42bb945072424b939;p=mothur.git

diff --git a/ordervector.hpp b/ordervector.hpp
new file mode 100644
index 0000000..92259a8
--- /dev/null
+++ b/ordervector.hpp
@@ -0,0 +1,51 @@
+#ifndef ORDER_H
+#define ORDER_H
+
+#include "datavector.hpp"
+#include "sabundvector.hpp"
+#include "rabundvector.hpp"
+
+
+class OrderVector : public DataVector {
+	
+public:
+	OrderVector();
+//	OrderVector(int);
+//	OrderVector(const OrderVector& ov);
+	OrderVector(int ns, int nb=0, int mr=0)	: DataVector(), data(ns, -1), maxRank(0), numBins(0), numSeqs(0) {};
+	OrderVector(const OrderVector& ov)	: DataVector(ov.label), data(ov.data), maxRank(ov.maxRank), numBins(ov.numBins), numSeqs(ov.numSeqs), needToUpdate(ov.needToUpdate) {if(needToUpdate == 1){	updateStats();}};
+
+
+	OrderVector(string, vector<int>);
+	OrderVector(ifstream&);
+	~OrderVector(){};
+	
+	void set(int, int);
+	int get(int);
+	void push_back(int);
+	void resize(int);
+	int size();
+	void print(string, ostream&);
+	vector<int>::iterator begin();
+	vector<int>::iterator end();
+
+	void print(ostream&);
+
+	int getNumBins();
+	int getNumSeqs();
+	int getMaxRank();
+		
+	RAbundVector getRAbundVector();
+	SAbundVector getSAbundVector();
+	OrderVector getOrderVector(map<string,int>*);
+	
+private:
+	vector<int> data;
+	int maxRank;
+	int numBins;
+	int numSeqs;
+	bool needToUpdate;
+	void updateStats();
+};
+
+#endif