X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=ordervector.hpp;fp=ordervector.hpp;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=0139a6404b833707909cb425885bb3be683becff;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/ordervector.hpp b/ordervector.hpp
deleted file mode 100644
index 0139a64..0000000
--- a/ordervector.hpp
+++ /dev/null
@@ -1,62 +0,0 @@
-#ifndef ORDER_H
-#define ORDER_H
-
-#include "datavector.hpp"
-#include "sabundvector.hpp"
-#include "rabundvector.hpp"
-
-/* This class is a child to datavector.  It represents OTU information at a certain distance. 
-	A order vector can be converted into and listvector, rabundvector or sabundvector.
-	Each member of the internal container "data" represents the OTU from which it came. 
-	So in the example below since there are 6 sequences in OTU 1 there are six 1's in the ordervector.
-	and since there are 2 sequences in OTU 3 there are two 3's in the ordervector.
-	example: listvector		=	a,b,c,d,e,f		g,h,i		j,k		l		m  
-			 rabundvector	=	6				3			2		1		1
-			 sabundvector	=	2		1		1		0		0		1
-			 ordervector	=	1	1	1	1	1	1	2	2	2	3	3	4	5	*/
-
-
-class OrderVector : public DataVector {
-	
-public:
-	OrderVector();
-//	OrderVector(int);
-//	OrderVector(const OrderVector& ov);
-	OrderVector(int ns, int nb=0, int mr=0)	: DataVector(), data(ns, -1), maxRank(0), numBins(0), numSeqs(0) {};
-	OrderVector(const OrderVector& ov)	: DataVector(ov.label), data(ov.data), maxRank(ov.maxRank), numBins(ov.numBins), numSeqs(ov.numSeqs), needToUpdate(ov.needToUpdate) {if(needToUpdate == 1){	updateStats();}};
-
-
-	OrderVector(string, vector<int>);
-	OrderVector(ifstream&);
-	~OrderVector(){};
-	
-	void set(int, int);
-	int get(int);
-	void push_back(int);
-	void resize(int);
-	int size();
-	void clear();
-	void print(string, ostream&);
-	vector<int>::iterator begin();
-	vector<int>::iterator end();
-
-	void print(ostream&);
-
-	int getNumBins();
-	int getNumSeqs();
-	int getMaxRank();
-		
-	RAbundVector getRAbundVector();
-	SAbundVector getSAbundVector();
-	OrderVector getOrderVector(map<string,int>*);
-	
-private:
-	vector<int> data;
-	int maxRank;
-	int numBins;
-	int numSeqs;
-	bool needToUpdate;
-	void updateStats();
-};
-
-#endif