X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=optionparser.h;h=facd1f85182cc526a6db01d85968d9231afcfc88;hb=2009a1a1f47e7467094d844e7c07ab8ddf7bb447;hp=b4d0dcb8691e103aa5c7259f3733d180e93cf29a;hpb=0470f6d037aacb3563c3f7010708120a4a67d4e6;p=mothur.git

diff --git a/optionparser.h b/optionparser.h
index b4d0dcb..facd1f8 100644
--- a/optionparser.h
+++ b/optionparser.h
@@ -13,16 +13,20 @@
 
 
 #include "mothur.h"
-
+#include "mothurout.h"
+#include "command.hpp"
 
 /***********************************************************************/
 
 class OptionParser {
-	public:
-		OptionParser() {}
-		~OptionParser() {}
-		void parse(string, map<string, string>&);  //pass it an option string and a container
-											  //fills the container key=parameter name, value=parameter value
+public:
+	OptionParser(string);
+	~OptionParser() {}
+	map<string, string> getParameters();
+	bool getNameFile(vector<string>);
+private:
+	map<string, string> parameters;
+	MothurOut* m;
 };
 
 /***********************************************************************/