X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=optionparser.h;h=044299d43e51442aa673611003c00a80f557deaf;hb=1a968f34ae2d2680eaf189a197d1a21b8dfd6c03;hp=dab14debe385472c35f5f405aa8e12b8b1dabcf0;hpb=cd37904452dc95b183ff313ff05720c562902487;p=mothur.git

diff --git a/optionparser.h b/optionparser.h
index dab14de..044299d 100644
--- a/optionparser.h
+++ b/optionparser.h
@@ -13,17 +13,21 @@
 
 
 #include "mothur.h"
-
+#include "mothurout.h"
+#include "command.hpp"
 
 /***********************************************************************/
 
 class OptionParser {
 public:
 	OptionParser(string);
+    OptionParser(string, map<string, string>&);
 	~OptionParser() {}
 	map<string, string> getParameters();
+	bool getNameFile(vector<string>);
 private:
 	map<string, string> parameters;
+	MothurOut* m;
 };
 
 /***********************************************************************/