X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=optionparser.cpp;h=d9d9145f1ffcf73caa4c502fb19acec23476929e;hb=dd9beffb7a3ac5c0007c4c224b216e8b8b2f9abb;hp=a6d5c0a668be5ebdc259a3108d4ff11341f7cd00;hpb=5a4ac4f954c4b4445bcee272f1f8220ddcc9c1e4;p=mothur.git

diff --git a/optionparser.cpp b/optionparser.cpp
index a6d5c0a..d9d9145 100644
--- a/optionparser.cpp
+++ b/optionparser.cpp
@@ -116,6 +116,8 @@ map<string, string> OptionParser::getParameters() {
                         it->second = m->getDesignFile();
                     }else if (it->first == "sff") {
                         it->second = m->getSFFFile();
+                    }else if (it->first == "flow") {
+                            it->second = m->getFlowFile();
                     }else if (it->first == "oligos") {
                         it->second = m->getOligosFile();
                     }else if (it->first == "accnos") {