X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=optionparser.cpp;h=a6d5c0a668be5ebdc259a3108d4ff11341f7cd00;hb=96dbe925073caefaed6e6db85659c144a806aeb1;hp=e3850e52c56f629a6e5395203f31cc1299a6193b;hpb=d70a1c2d70c5a516e74880709e3b48cfc1ce0321;p=mothur.git

diff --git a/optionparser.cpp b/optionparser.cpp
index e3850e5..a6d5c0a 100644
--- a/optionparser.cpp
+++ b/optionparser.cpp
@@ -124,7 +124,7 @@ map<string, string> OptionParser::getParameters() {
                         it->second = m->getTaxonomyFile();
                     }else if (it->first == "biom") {
                         it->second = m->getBiomFile();
-                    }else if (it->first == "counttable") {
+                    }else if (it->first == "count") {
                             it->second = m->getCountTableFile();
                     }else {
                         m->mothurOut("[ERROR]: mothur does not save a current file for " + it->first); m->mothurOutEndLine();