X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=optionparser.cpp;h=a6d5c0a668be5ebdc259a3108d4ff11341f7cd00;hb=3c5a709812a966bf3cabc8bb15f86f0c36cf1e34;hp=e3850e52c56f629a6e5395203f31cc1299a6193b;hpb=f06b339c5fc4b6d1b9d2a08fe16bf7670bf7aeb4;p=mothur.git

diff --git a/optionparser.cpp b/optionparser.cpp
index e3850e5..a6d5c0a 100644
--- a/optionparser.cpp
+++ b/optionparser.cpp
@@ -124,7 +124,7 @@ map<string, string> OptionParser::getParameters() {
                         it->second = m->getTaxonomyFile();
                     }else if (it->first == "biom") {
                         it->second = m->getBiomFile();
-                    }else if (it->first == "counttable") {
+                    }else if (it->first == "count") {
                             it->second = m->getCountTableFile();
                     }else {
                         m->mothurOut("[ERROR]: mothur does not save a current file for " + it->first); m->mothurOutEndLine();