X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=optionparser.cpp;h=08032b32b83556f7ace0b83e235e51121e80f399;hb=4956d362c5bc6a47cf7a6290258f0e763e3a406e;hp=2de1621bcb9a73ac9c17b02384ee6d9b0f3f5d49;hpb=cd37904452dc95b183ff313ff05720c562902487;p=mothur.git

diff --git a/optionparser.cpp b/optionparser.cpp
index 2de1621..08032b3 100644
--- a/optionparser.cpp
+++ b/optionparser.cpp
@@ -13,28 +13,24 @@
 
 OptionParser::OptionParser(string option) {
 	try {
-		
+		m = MothurOut::getInstance();
 		if (option != "") {
 			
 			string key, value;		
 			//reads in parameters and values
 			while((option.find_first_of(',') != -1)) {  //while there are parameters
-				splitAtComma(value, option);
-				splitAtEquals(key, value);
+				m->splitAtComma(value, option);
+				m->splitAtEquals(key, value);
 				parameters[key] = value;
 			}
 			
 			//in case there is no comma and to get last parameter after comma
-			splitAtEquals(key, option);
+			m->splitAtEquals(key, option);
 			parameters[key] = option;
 		}
 	}
 	catch(exception& e) {
-		cout << "Standard Error: " << e.what() << " has occurred in the OptionParser class Function parse. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-		exit(1);
-	}
-	catch(...) {
-		cout << "An unknown error has occurred in the OptionParser class function parse. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+		m->errorOut(e, "OptionParser", "parse");
 		exit(1);
 	}
 }