X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=optionparser.cpp;h=08032b32b83556f7ace0b83e235e51121e80f399;hb=4169642e8a8d45f71a4a7241ee02f1b1aae29520;hp=8f0e29d2deee52f5996da965f12e58dc66572d95;hpb=510b1cfc25cd79391d6973ca20c5ec25fb1bb3b2;p=mothur.git

diff --git a/optionparser.cpp b/optionparser.cpp
index 8f0e29d..08032b3 100644
--- a/optionparser.cpp
+++ b/optionparser.cpp
@@ -13,24 +13,24 @@
 
 OptionParser::OptionParser(string option) {
 	try {
-		
+		m = MothurOut::getInstance();
 		if (option != "") {
 			
 			string key, value;		
 			//reads in parameters and values
 			while((option.find_first_of(',') != -1)) {  //while there are parameters
-				splitAtComma(value, option);
-				splitAtEquals(key, value);
+				m->splitAtComma(value, option);
+				m->splitAtEquals(key, value);
 				parameters[key] = value;
 			}
 			
 			//in case there is no comma and to get last parameter after comma
-			splitAtEquals(key, option);
+			m->splitAtEquals(key, option);
 			parameters[key] = option;
 		}
 	}
 	catch(exception& e) {
-		errorOut(e, "OptionParser", "parse");
+		m->errorOut(e, "OptionParser", "parse");
 		exit(1);
 	}
 }