X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=optionparser.cpp;fp=optionparser.cpp;h=7ff6ae7691b0437c1589051778d929307dbe36f1;hb=0470f6d037aacb3563c3f7010708120a4a67d4e6;hp=0000000000000000000000000000000000000000;hpb=bede5752eaeedb5a7e339439b6ba2f6670bca2b9;p=mothur.git

diff --git a/optionparser.cpp b/optionparser.cpp
new file mode 100644
index 0000000..7ff6ae7
--- /dev/null
+++ b/optionparser.cpp
@@ -0,0 +1,40 @@
+/*
+ *  optionparser.cpp
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 6/8/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "optionparser.h"
+
+/***********************************************************************/
+void OptionParser::parse(string option, map<string, string>& container) {
+	try {
+		
+		if (option != "") {
+		
+			string key, value;		
+			//reads in parameters and values
+			while((option.find_first_of(',') != -1)) {  //while there are parameters
+					splitAtComma(value, option);
+					splitAtEquals(key, value);
+					container[key] = value;
+			}
+		
+			//in case there is no comma and to get last parameter after comma
+			splitAtEquals(key, option);
+			container[key] = option;
+		}
+	}
+	catch(exception& e) {
+		cout << "Standard Error: " << e.what() << " has occurred in the OptionParser class Function parse. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+		exit(1);
+	}
+	catch(...) {
+		cout << "An unknown error has occurred in the OptionParser class function parse. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+		exit(1);
+	}
+}
+/***********************************************************************/
\ No newline at end of file