X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=nseqs.h;fp=nseqs.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=c0f9549c87584bbf99e503388ff737c9f5343e8e;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/nseqs.h b/nseqs.h
deleted file mode 100644
index c0f9549..0000000
--- a/nseqs.h
+++ /dev/null
@@ -1,52 +0,0 @@
-#ifndef NSEQS_H
-#define NSEQS_H
-
-/*
- *  nseqs.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 3/16/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-
-
-#include "calculator.h"
-
-/***********************************************************************/
-
-class NSeqs : public Calculator {
-
-public:
-	NSeqs() : Calculator("nseqs", 1, false) {};
-	EstOutput getValues(SAbundVector* rank){
-		data.resize(1,0);
-		data[0] = (double)rank->getNumSeqs();
-		return data;
-	}
-	
-	EstOutput getValues(vector<SharedRAbundVector*> shared) { //return number of sequences in the sharedotus
-		
-		int numGroups = shared.size();
-		data.clear(); data.resize(numGroups,0);
-
-		for (int i = 0; i < shared[0]->getNumBins(); i++) {
-			//get bin values and set sharedByAll 
-			bool sharedByAll = true;
-			for (int j = 0; j < numGroups; j++) {
-				if (shared[j]->getAbundance(i) == 0) { sharedByAll = false; }
-			}
-			
-			//they are shared
-			if (sharedByAll == true) {  for (int j = 0; j < numGroups; j++) {  data[j] += shared[j]->getAbundance(i);  } }
-		}
-
-		return data;
-	}
-	string getCitation() { return "http://www.mothur.org/wiki/Nseqs"; }
-};
-
-/***********************************************************************/
-
-#endif