X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=normalizesharedcommand.h;h=2feb40d1bcf105a485b5790ebc3be2484a94f0d5;hb=0cefb55a2616975bd4a144fc345693695ffc9bb6;hp=26bc0e4ca542de7a7c56cf2299918ce0f2819e70;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;p=mothur.git

diff --git a/normalizesharedcommand.h b/normalizesharedcommand.h
index 26bc0e4..2feb40d 100644
--- a/normalizesharedcommand.h
+++ b/normalizesharedcommand.h
@@ -24,7 +24,11 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "normalize.shared";		}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
+	string getCitation() { return "http://www.mothur.org/wiki/Normalize.shared"; }
+	string getDescription()		{ return "normalize samples in a shared or relabund file"; }
+
 	
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }	
@@ -41,8 +45,8 @@ private:
 	int norm;
 	vector<string> Groups, outputNames;
 		
-	int normalize(vector<SharedRAbundVector*>&, ofstream&);
-	int normalize(vector<SharedRAbundFloatVector*>&, ofstream&);
+	int normalize(vector<SharedRAbundVector*>&);
+	int normalize(vector<SharedRAbundFloatVector*>&);
 	int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
 	int eliminateZeroOTUS(vector<SharedRAbundFloatVector*>&);