X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=normalizesharedcommand.h;h=22158bd6d5ff136d0df81d0304b476ec580b8b7a;hb=3e2465c16d187247ce3befd29811c2d5dfc15ee8;hp=fcfc727b23ba0e4aae0fc1d1406c6799fde81689;hpb=b20d7d9b1b0eeeaedb78d8fdf26833fd212d2e81;p=mothur.git

diff --git a/normalizesharedcommand.h b/normalizesharedcommand.h
index fcfc727..22158bd 100644
--- a/normalizesharedcommand.h
+++ b/normalizesharedcommand.h
@@ -21,7 +21,12 @@ class NormalizeSharedCommand : public Command {
 
 public:
 	NormalizeSharedCommand(string);
+	NormalizeSharedCommand();
 	~NormalizeSharedCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
 	void help();
 	
@@ -35,7 +40,8 @@ private:
 	set<string> labels; //holds labels to be used
 	string groups, label, outputDir, method;
 	int norm;
-	vector<string> Groups;
+	vector<string> Groups, outputNames;
+	map<string, vector<string> > outputTypes;
 	
 	int normalize(vector<SharedRAbundVector*>&, ofstream&);
 	int eliminateZeroOTUS(vector<SharedRAbundVector*>& thislookup);