X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=normalizesharedcommand.cpp;h=37cfb5daa98b4eeb850b44d60e5e9d80fa268de5;hb=264c8a3c759d9a999c485236e98dac98d4f0db5f;hp=d9405a5129dd238ee2992a2986289ffffd6ed167;hpb=e840ba0e90a2b2be39e0910e4be23dde6a14cbac;p=mothur.git

diff --git a/normalizesharedcommand.cpp b/normalizesharedcommand.cpp
index d9405a5..37cfb5d 100644
--- a/normalizesharedcommand.cpp
+++ b/normalizesharedcommand.cpp
@@ -381,6 +381,13 @@ int NormalizeSharedCommand::execute(){
 		m->mothurOut(outputFileName); m->mothurOutEndLine(); outputNames.push_back(outputFileName); outputTypes["shared"].push_back(outputFileName);
 		m->mothurOutEndLine();
 		
+		//set shared file as new current sharedfile
+		string current = "";
+		itTypes = outputTypes.find("shared");
+		if (itTypes != outputTypes.end()) {
+			if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setSharedFile(current); }
+		}
+		
 		return 0;
 	}
 	catch(exception& e) {