X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=normalizesharedcommand.cpp;fp=normalizesharedcommand.cpp;h=a4bdd47099c350e77cfe238bcf34e254d1db9341;hb=7bf9a81bba76538ecaf351ae208de3da4bf1b6dd;hp=07c353af3c33847978638fd71d1e220d34c090d4;hpb=220dc345e493cddc569521111ce32ac4d965ab7f;p=mothur.git

diff --git a/normalizesharedcommand.cpp b/normalizesharedcommand.cpp
index 07c353a..a4bdd47 100644
--- a/normalizesharedcommand.cpp
+++ b/normalizesharedcommand.cpp
@@ -122,12 +122,12 @@ NormalizeSharedCommand::NormalizeSharedCommand(string option) {
 			sharedfile = validParameter.validFile(parameters, "shared", true);
 			if (sharedfile == "not open") { sharedfile = ""; abort = true; }	
 			else if (sharedfile == "not found") { sharedfile = ""; }
-			else {  format = "sharedfile"; inputfile = sharedfile; }
+			else {  format = "sharedfile"; inputfile = sharedfile; m->setSharedFile(sharedfile); }
 			
 			relabundfile = validParameter.validFile(parameters, "relabund", true);
 			if (relabundfile == "not open") { relabundfile = ""; abort = true; }	
 			else if (relabundfile == "not found") { relabundfile = ""; }
-			else {  format = "relabund"; inputfile = relabundfile; }
+			else {  format = "relabund"; inputfile = relabundfile; m->setRelAbundFile(relabundfile); }
 			
 			
 			if ((sharedfile == "") && (relabundfile == "")) {