X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=nmdscommand.h;h=92b694864a6d15f5b5dc20f176a271a7506ae6eb;hb=541bab1dac00688b4c3a8c4a95ab464412663c50;hp=861e8eaf95eb79a02c4e918a732f13c19f3ce845;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;p=mothur.git

diff --git a/nmdscommand.h b/nmdscommand.h
index 861e8ea..92b6948 100644
--- a/nmdscommand.h
+++ b/nmdscommand.h
@@ -37,8 +37,12 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "nmds";					}
 	string getCommandCategory()		{ return "Hypothesis Testing";		}
-	string getHelpString();	
 	
+	string getHelpString();	
+    string getOutputPattern(string);	
+	string getCitation() { return "Borg, Groenen (1997). Non-metric multidimensional scaling function using the majorization algorithm, in Modern Multidimensional Scaling. Ed. T.F. Cox and M.A.A. Cox. Chapman and Hall. \nhttp://www.mothur.org/wiki/Nmds"; }
+	string getDescription()		{ return "nmds"; }
+
 	int execute();
 	void help() { m->mothurOut(getHelpString()); }