X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=nmdscommand.h;h=92b694864a6d15f5b5dc20f176a271a7506ae6eb;hb=3914b0d6480f67df53b1e838f51c4e6155710434;hp=f099f95a4c0baadc0d50747cac5cd18e6972439f;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git

diff --git a/nmdscommand.h b/nmdscommand.h
index f099f95..92b6948 100644
--- a/nmdscommand.h
+++ b/nmdscommand.h
@@ -37,9 +37,12 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "nmds";					}
 	string getCommandCategory()		{ return "Hypothesis Testing";		}
-	string getHelpString();	
-	string getCitation() { return "Non-metric multidimensional scaling function using the majorization algorithm from Borg & Groenen 1997, Modern Multidimensional Scaling. http://www.mothur.org/wiki/Nmds"; }
 	
+	string getHelpString();	
+    string getOutputPattern(string);	
+	string getCitation() { return "Borg, Groenen (1997). Non-metric multidimensional scaling function using the majorization algorithm, in Modern Multidimensional Scaling. Ed. T.F. Cox and M.A.A. Cox. Chapman and Hall. \nhttp://www.mothur.org/wiki/Nmds"; }
+	string getDescription()		{ return "nmds"; }
+
 	int execute();
 	void help() { m->mothurOut(getHelpString()); }