X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=nmdscommand.h;h=90364adcdc03198320a12c86fc0ef4b7f970c650;hb=a9dbc22713bfc056a797361dd757b1a5c98e1c01;hp=f099f95a4c0baadc0d50747cac5cd18e6972439f;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git

diff --git a/nmdscommand.h b/nmdscommand.h
index f099f95..90364ad 100644
--- a/nmdscommand.h
+++ b/nmdscommand.h
@@ -37,9 +37,11 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "nmds";					}
 	string getCommandCategory()		{ return "Hypothesis Testing";		}
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
-	string getCitation() { return "Non-metric multidimensional scaling function using the majorization algorithm from Borg & Groenen 1997, Modern Multidimensional Scaling. http://www.mothur.org/wiki/Nmds"; }
-	
+	string getCitation() { return "Borg, Groenen (1997). Non-metric multidimensional scaling function using the majorization algorithm, in Modern Multidimensional Scaling. Ed. T.F. Cox and M.A.A. Cox. Chapman and Hall. \nhttp://www.mothur.org/wiki/Nmds"; }
+	string getDescription()		{ return "nmds"; }
+
 	int execute();
 	void help() { m->mothurOut(getHelpString()); }